Transcript 8223 | MetamORF

Transcript

ID CARD

MetamORF ID

8223

ENSMUST00000177428

Name

Grn-210

Strand

Biotype

protein_coding

Start-end positions

102435416-102437048

CDS Start-stop positions

-102436819

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:14824

Aliases

ENSMUSG00000034708,
epithelin, GP88, Grn,
MGI:95832, NCBI:14824, OFF:Grn,
PCDGF, PEPI, Pgrn

Chr 11

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
776452	111	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, E14, Liver
294763	126	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Liver
776286	120	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, E14, Liver
650823	87	CTG ...	LAW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
303444	42	TTG ...	LEI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	B_cell
1289175	81	AGG ...	RGT ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF	E14
772095	69	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	B_cell
1292018	30	AGG ...	RDP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
770554	66	TTG ...	LRK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Liver, R1E
936495	231	ATA ...	IPA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
644459	81	GTG ...	VEK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	B_cell
1291171	72	AAG ...	KCL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
419101	57	AAG ...	KIP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	C2C12
774765	60	ATG ...	MIT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
640968	90	ATG ...	MWS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
307171	150	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Liver
310420	108	ATG ...	MSG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	B_cell
293909	147	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Liver
1293869	213	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
8650	48	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
1287097	60	AAG ...	KKI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	E14
294589	129	TTG ...	LLP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Liver
1296045	126	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
446766	90	CTG ...	LSE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
772140	72	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, E14, Liver
769223	48	GTG ...	VRT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Liver
8222	45	TTG ...	LPG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
777867	114	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Liver
1285980	69	ATT ...	ISA ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF	E14
445859	33	TTG ...	LRD ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	B_cell, Liver, R1E, Spleen_B_cell
771169	36	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Liver
775000	57	CTG ...	LCA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, R1E
312174	177	CTG ...	LSA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Liver
773482	42	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	B_cell
454894	210	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Liver
639958	96	TTG ...	LGM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF	B_cell, E14
771901	93	ATG ...	MDV ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	sORF	B_cell, E14, Liver, R1E

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