Transcript 701292

Transcript

ID CARD

MetamORF ID

701292

ENSMUST00000177024

Name

Traf7-219

Strand

Biotype

retained_intron

Start-end positions

24508850-24512488

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:224619

Aliases

ENSMUSG00000052752,
MGI:3042141, NCBI:224619, OFF:Traf7,
RFWD1, Traf7

Chr 17

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
707768	84	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
702992	51	ATG ...	MGH ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
704056	30	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
384469	81	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
701804	45	GTG ...	VTC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
702336	54	TTG ...	LPS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
708674	30	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
701384	45	ATG ...	MMV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
701386	36	TTG ...	LCW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
708346	63	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
383253	69	CTG ...	LGK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
481729	57	TTG ...	LTA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
706081	108	CTG ...	LEY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
703293	60	GTG ...	VSI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
706115	45	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
387785	96	GTG ...	VNT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
707481	54	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
702701	51	CTG ...	LYA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
705756	42	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
702542	30	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
706828	123	GTG ...	VWD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
704905	87	CTG ...	LHT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
383629	165	CTG ...	LKE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
701291	42	TTG ...	LYH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
708748	57	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
384684	48	CTG ...	LEG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
706620	36	TTG ...	LSV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
703776	51	CTG ...	LSH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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