Transcript 901890

Transcript

ID CARD

MetamORF ID

901890

ENSMUST00000176670

Name

Cpsf6-206

Strand

Biotype

protein_coding

Start-end positions

117349042-117376929

CDS Start-stop positions

117355938-117376898

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:432508

Aliases

4733401N12Rik,
AI256641, CFIM, CFIM68,
Cpsf6, ENSMUSG00000055531, HPBRII-4,
HPBRII-7, MGI:1913948, NCBI:432508,
OFF:Cpsf6

Chr 10

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
88392	51	GTG ...	VTE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Neutrophil
288399	204	CTG ...	LDP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, MEF, v6-5
901889	132	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
910004	147	ATC ...	IGT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
241866	138	ATG ...	MAM ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, v6-5
288674	282	CTG ...	LQM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, MEF, v6-5
287680	78	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
7701	39	GTG ...	VTE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Neutrophil
287850	51	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
288870	54	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
288822	276	ATG ...	MIV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, MEF, R1E, v6-5
170599	78	ATG ...	MWV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
929072	66	ATC ...	IGT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
290818	210	ATG ...	MGL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, v6-5
914203	192	ATG ...	MTI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
87901	111	ATG ...	MTI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
7760	192	GTG ...	VND ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, MEF, v6-5
286972	69	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
212231	36	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
181213	162	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7674	231	ATG ...	MES ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, v6-5
290052	63	ATG ...	MDN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC

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