Transcript 62022 | MetamORF

Transcript

ID CARD

MetamORF ID

62022

ENSMUST00000176015

Name

Uchl1-202

Strand

Biotype

retained_intron

Start-end positions

66676892-66687229

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:22223

Aliases

AW822034,
C88048, ENSMUSG00000029223, gad,
MGI:103149, NCBI:22223, OFF:Uchl1,
PGP 9.5, PGP9.5, R75593,
UCH-L1, UCHL-1, Uchl1

Chr 5

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1019857	102	CTG ...	LWY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
63610	207	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
63999	156	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1020293	135	TTG ...	LIH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
65289	69	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
64168	147	GTG ...	VLA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
174384	60	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
63612	39	CTG ...	LFP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
64151	36	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
65330	210	CTG ...	LKG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
65950	102	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
64931	78	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
64308	78	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
62021	36	ATG ...	MTP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
66235	93	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
64673	144	TTG ...	LAK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
63124	45	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
63641	36	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
1018622	93	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
62071	69	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
64161	48	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
63832	84	GTG ...	VNF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
65948	66	CTG ...	LFN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
66073	135	CTG ...	LGV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, Testis
63171	45	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis

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