Transcript 1073697

Transcript

ID CARD

MetamORF ID

1073697

ENSMUST00000175973

Name

Abhd5-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

122351732-122377932

CDS Start-stop positions

122351787-122367976

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:67469

Aliases

1300003D03Rik,
2010002J10Rik, Abhd5, CGI-58,
ENSMUSG00000032540, IECN5, MGI:1914719,
NCBI:67469, NCIE2, OFF:Abhd5

Chr 9

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
264580	81	TTG ...	LDK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14, Liver, Neutrophil
87073	30	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
1073696	117	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Liver, Neutrophil
258835	234	CTG ...	LNF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Liver, MEF, Neutrophil
618787	39	CTG ...	LCA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
265021	51	CTG ...	LGG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, Neutrophil
622138	123	TTG ...	LTY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
617169	129	ATG ...	MPL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
616735	36	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
619020	135	CTG ...	LSM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
6920	96	ATG ...	MCP ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
621515	54	ATG ...	MAD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1329112	30	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver
255563	183	TTG ...	LGF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Liver, MEF, Neutrophil
264659	39	TTG ...	LAA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, Neutrophil
263876	96	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
1075227	66	TTG ...	LLG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, Neutrophil
1074677	132	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Liver, Neutrophil
617210	42	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

Export data