Transcript 42065 | MetamORF

Transcript

ID CARD

MetamORF ID

42065

ENSMUST00000175868

Name

Gbf1-204

Strand

Biotype

retained_intron

Start-end positions

46152530-46255997

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:107338

Aliases

1700083E03Rik,
AI035702, AW049900, ENSMUSG00000025224,
Gbf1, MGI:1861607, mKIAA0248,
NCBI:107338, OFF:Gbf1

Chr 19

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
402799	33	ATG ...	MSC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1415071	45	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
408363	51	TTG ...	LVP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
42833	63	CTG ...	LHS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
1201120	144	AAG ...	KNI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
403363	111	ATG ...	MYS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
1201759	291	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
720202	60	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
718582	75	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
722099	42	ATG ...	MKN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
723618	57	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
724152	60	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
42064	39	CTG ...	LDM ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
402686	120	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
403301	33	ATG ...	MPD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
402538	63	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
404320	36	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
721917	39	TTG ...	LWA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1202885	84	ATG ...	MEH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
723945	117	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
719503	96	ATG ...	MRA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
408536	48	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
402853	57	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
720581	108	TTG ...	LSG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
407297	54	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
719081	117	TTG ...	LPE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
487459	120	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell

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