Transcript 89624 | MetamORF

Transcript

ID CARD

MetamORF ID

89624

ENSMUST00000174762

Name

Usp9x-207

Strand

Biotype

retained_intron

Start-end positions

13129060-13132570

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:22284

Aliases

5730589N07Rik,
AA407302, AA407699, AL022658,
AL022749, Dffrx, ENSMUSG00000031010,
FAF-X, Fafl, MGI:894681,
NCBI:22284, OFF:Usp9x, Usp9x

Chr X

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1034560	147	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1034311	237	CTG ...	LSM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
441557	45	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
632990	48	GTG ...	VMA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
628842	45	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
89058	249	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
443401	51	TTG ...	LAM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
442109	57	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
89623	264	TTG ...	LKS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
89621	171	TTG ...	LDH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
628712	63	ATG ...	MVI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
88241	300	TTG ...	LTD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E

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