Transcript 53205 | MetamORF

Transcript

ID CARD

MetamORF ID

53205

ENSMUST00000174671

Name

Gigyf2-221

Strand

Biotype

processed_transcript

Start-end positions

87433120-87450796

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:227331

Aliases

2610016F01Rik,
A830080H02Rik, AI852361, AW259676,
BC006835, ENSMUSG00000048000, Gigyf2,
MGI:2138584, mKIAA0642, NCBI:227331,
OFF:Gigyf2, Tnrc15

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
715780	48	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
730248	144	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
683281	87	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
53204	129	GTG ...	VQS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
1712629	30	TTG ...	LFH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
31443	108	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
702308	72	CTG ...	LPD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
30020	201	CTG ...	LHT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
31552	177	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
37455	63	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
452214	30	GTG ...	VCL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
37542	222	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
601644	57	ATG ...	MKK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
71574	90	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
42057	114	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
61502	39	CTG ...	LNM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
573203	48	ATG ...	MQT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
40992	192	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
281988	54	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1630634	30	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
731121	147	CTG ...	LPN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
677662	39	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3

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