Transcript 1812596

Transcript

ID CARD

MetamORF ID

1812596

ENSMUST00000174477

Name

Hnrnpl-209

Strand

Biotype

protein_coding

Start-end positions

28810937-28822240

CDS Start-stop positions

-28821906

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:15388

Aliases

C79783,
D830027H13Rik, ENSMUSG00000015165, Hnrnpl,
Hnrpl, MGI:104816, NCBI:15388,
OFF:Hnrnpl

Chr 7

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
426789	66	TTG ...	LWP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
426330	138	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	R1E
76280	87	ATG ...	MYS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	R1E
72981	84	TTG ...	LPV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	R1E
426022	120	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
4692	48	TTG ...	LWK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
3671	39	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
4859	54	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
76628	72	CTG ...	LHL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E
73724	66	TTG ...	LSI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	R1E
425265	165	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	R1E
73665	51	ATG ...	MTP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	R1E
75747	75	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
72264	132	ATG ...	MDP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	R1E
73447	105	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E
426903	132	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
3980	72	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	R1E
4416	57	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E

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