Transcript 782025

Transcript

ID CARD

MetamORF ID

782025

ENSMUST00000174472

Name

Pak1ip1-203

Strand

Biotype

retained_intron

Start-end positions

41001266-41013013

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:68083

Aliases

5830431I15Rik,
5930415H02Rik, AA419825, AI314040,
AW556169, ENSMUSG00000038683, Gdpd1,
MGI:1915333, NCBI:68083, OFF:Pak1ip1,
Pak1ip1, PIP1

Chr 13

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
668952	39	GTG ...	VTA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1303439	42	AAG ...	KRW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
463563	51	TTG ...	LLC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
27844	39	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
420630	66	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
27028	111	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
27189	51	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
462296	36	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
338950	54	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
26759	42	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1301396	57	ATC ...	IHP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
464128	63	GTG ...	VTA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
463041	48	TTG ...	LCR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1041578	141	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1302859	102	ACG ...	TSA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1301607	120	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
335318	42	CTG ...	LAS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1304463	117	AGG ...	RIF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1698789	120	GTG ...	VRI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1302938	33	AAG ...	KCL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
464368	93	CTG ...	LTC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
941607	60	AGG ...	RSC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1302379	171	ATC ...	IEK ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	E14
27774	69	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1301814	54	ATC ...	IWD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
942858	135	ATC ...	IGS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14

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