Transcript 942004

Transcript

ID CARD

MetamORF ID

942004

ENSMUST00000174394

Name

Jarid2-214

Strand

Biotype

processed_transcript

Start-end positions

44729474-44731574

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:16468

Aliases

ENSMUSG00000038518,
Jarid2, Jmj, jumonji,
MGI:104813, NCBI:16468, OFF:Jarid2

Chr 13

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1304387	69	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1136214	39	ATG ...	MPP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1135565	54	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
783371	135	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
783818	120	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
783703	162	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
783984	159	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
941676	42	ATT ...	ILN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
781892	111	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
782560	207	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
942003	69	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
783245	129	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
782991	156	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
782166	105	CTG ...	LQH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
783484	108	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5

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