Transcript 74042 | MetamORF

Transcript

ID CARD

MetamORF ID

74042

ENSMUST00000174064

Name

Apoe-206

Strand

Biotype

protein_coding

Start-end positions

19696109-19699188

CDS Start-stop positions

19696380-19698230

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:11816

Aliases

AI255918,
Apo-E, Apoe, ENSMUSG00000002985,
MGI:88057, NCBI:11816, OFF:Apoe

Chr 7

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
232712	60	CTG ...	LEA ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Liver, MEF, Neutrophil, NSC, R1E, v6-5
230231	219	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, R1E
879669	261	ATG ...	MGF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, R1E
235199	30	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil
1474343	57	GTG ...	VTA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
232282	216	GTG ...	VFK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, R1E
3765	78	GTG ...	VAK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1817202	63	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1472383	60	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
752772	96	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil
4137	51	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
987608	108	GTG ...	VST ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
752991	45	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
211064	36	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
74041	48	CTG ...	LLR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, Liver, Neutrophil, Testis, v6-5
4372	120	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
222849	63	CTG ...	LGS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14, Liver
233448	45	TTG ...	LFR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Neutrophil
987449	99	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
916499	51	AAG ...	KDL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
753835	60	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1816314	54	GTG ...	VSA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1818138	60	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

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