Transcript 639819

Transcript

ID CARD

MetamORF ID

639819

ENSMUST00000174047

Name

Cct4-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

22990650-22997096

CDS Start-stop positions

22990754-22996407

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:12464

Aliases

2610204B21Rik,
A45, C78323, Cct4,
Cctd, ENSMUSG00000007739, MGI:104689,
NCBI:12464, OFF:Cct4

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
312385	42	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14
1285772	114	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
19877	114	GTG ...	VEL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver
296078	111	TTG ...	LVH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	B_cell
19496	99	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver
9119	51	CTG ...	LML ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
8007	174	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Liver
20930	108	TTG ...	LSK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
1289211	69	ACG ...	TSV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
302118	30	TTG ...	LDL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
8844	54	TTG ...	LLM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
1292818	54	ATT ...	IAG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1290495	51	AAG ...	KQE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
8631	48	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
419059	270	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
91443	117	CTG ...	LVE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Liver
18010	69	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver

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