Transcript 39470 | MetamORF

Transcript

ID CARD

MetamORF ID

39470

ENSMUST00000173701

Name

Hspa9-203

Strand

Biotype

retained_intron

Start-end positions

34938267-34939310

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:15526

Aliases

74kDa,
Csa, ENSMUSG00000024359, Grp75,
Hsc74, Hsp74, Hsp74a,
Hspa9, Hspa9a, MGI:96245,
Mortalin, Mot-2, Mot2,
Mthsp70, NCBI:15526, OFF:Hspa9,
Pbp74

Chr 18

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1198426	96	CTG ...	LEV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
40516	69	CTG ...	LER ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, Testis
1198236	36	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1199353	141	ATT ...	ISK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
957978	108	AGG ...	RRE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
39469	57	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, Testis
1198398	63	AGG ...	RTV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
958179	33	AGG ...	RQH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1198549	84	AGG ...	RQA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1631461	144	GTG ...	VIL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1630375	111	CTG ...	LNG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
801918	72	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
13452	72	TTG ...	LLE ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Liver, MEF, Neutrophil, Testis
1197337	111	AAG ...	KDS ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
485022	51	TTG ...	LKL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, Spleen_B_cell
801172	57	ATG ...	MTQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF
802706	93	GTG ...	VLK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
485826	63	GTG ...	VQQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell
1198733	78	ATA ...	IWL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
801462	90	TTG ...	LKQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
1631570	87	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1198834	84	ATC ...	IFP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1198754	87	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1631762	81	CTG ...	LGN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF

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