Transcript 85144 | MetamORF

Transcript

ID CARD

MetamORF ID

85144

ENSMUST00000173299

Name

Dnm2-210

Strand

Biotype

retained_intron

Start-end positions

21493943-21504622

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:13430

Aliases

b2b2159Clo,
Dnm2, Dyn2, ENSMUSG00000033335,
MGI:109547, NCBI:13430, OFF:Dnm2,
Udnm

Chr 9

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
435892	150	ATG ...	MRM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
437825	30	GTG ...	VAP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, v6-5
1331328	36	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
435652	36	CTG ...	LSH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
433891	144	ATG ...	MEH ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
85785	93	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, Testis, v6-5
85143	33	GTG ...	VFA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, Testis, v6-5
758971	72	CTG ...	LVD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
438307	78	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
86606	87	CTG ...	LDN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, Testis, v6-5
436738	90	TTG ...	LNW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
85217	63	GTG ...	VEK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, Testis, v6-5
435238	114	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5

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