Transcript 55626 | MetamORF

Transcript

ID CARD

MetamORF ID

55626

ENSMUST00000173154

Name

Exosc10-206

Strand

Biotype

processed_transcript

Start-end positions

148558431-148582390

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:50912

Aliases

ENSMUSG00000017264,
Exosc10, MGI:1355322, NCBI:50912,
OFF:Exosc10, p2, p3,
p4, PM-Scl, PM/Scl-100,
Pmscl2, RRP6

Chr 4

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55625	72	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
57688	108	CTG ...	LWE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56842	72	CTG ...	LDV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
57377	57	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56751	141	CTG ...	LLH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
1059038	93	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
57686	96	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
58763	183	CTG ...	LQK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
57476	123	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59173	159	GTG ...	VVN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
58125	135	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56535	114	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
57221	123	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
55900	54	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58688	156	GTG ...	VNM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
56587	171	CTG ...	LSY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
59022	117	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58661	114	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
59415	87	CTG ...	LNS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56140	186	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
58240	138	CTG ...	LHA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
57127	120	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
1177524	45	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
59128	141	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
58183	54	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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