Transcript 36036 | MetamORF

Transcript

ID CARD

MetamORF ID

36036

ENSMUST00000172929

Name

Prrc2a-203

Strand

Biotype

processed_transcript

Start-end positions

35157133-35164835

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:53761

Aliases

3110039B05Rik,
Bat-2, Bat2, D17H6S51E,
ENSMUSG00000024393, G2, MGI:1915467,
mKIAA4178, NCBI:53761, OFF:Prrc2a,
Prrc2a, Wbp12

Chr 17

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
380110	108	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
37376	105	TTG ...	LAW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
411079	87	ATC ...	IAR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
1626768	78	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
37670	45	CTG ...	LGT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Testis
37419	141	TTG ...	LRE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
37987	132	CTG ...	LSR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis
36744	72	ATG ...	MAC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
38623	177	CTG ...	LKG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
411178	90	AAG ...	KKY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
37968	87	ATG ...	MSF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, MEF, Testis
36881	60	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36672	30	TTG ...	LEG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Testis
955320	96	ACG ...	TYS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
385943	69	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
36681	162	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
380099	138	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
383428	168	CTG ...	LAH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
797278	120	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
36805	213	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36957	213	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
381518	60	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
37550	144	TTG ...	LGE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Testis
1455104	183	GTG ...	VTP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
36403	48	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
38124	105	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
382712	54	ATG ...	MDP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
37866	117	GTG ...	VDP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
36035	240	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37349	84	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
36412	72	CTG ...	LPR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis
36117	156	CTG ...	LPT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
381580	39	ATG ...	MDS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
37378	144	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1717601	66	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
38438	144	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36228	108	CTG ...	LQD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis
37311	135	GTG ...	VPA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis
37022	99	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36712	57	ATG ...	MER ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Testis
37882	102	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38282	99	CTG ...	LQA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis

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