Metam
ORF

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Transcript

ID CARD

MetamORF ID

867621

ID

ENSMUST00000172768

Name

Ptbp3-208

Strand

-

Biotype

protein_coding

Start-end positions

59476583-59548775

CDS Start-stop positions

59476883-59524425

CDS Relative positions

-

Sequences

Transcript sequence

GCG ...

Gene

ID

NCBI:230257

Aliases

5830471K22Rik,
AA407443, AI462022, AW107884,
C86549, ENSMUSG00000028382, MGI:1923334,
NCBI:230257, OFF:Ptbp3, Ptbp3,
Rod1


Chr 4

ORFs

29 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1084976 72

TTG ...

LKT ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
155627 33

GTG ...

VMS ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, Neutrophil, v6-5
679 30

CTG ...

LVS ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, v6-5
896739 33

ATG ...

MGF ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
897916 42

ATC ...

ISH ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
897923 102

ATT ...

ITL ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1060889 75

GTG ...

VNS ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, MEF, Neutrophil,
R1E
510569 108

ATG ...

MTT ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Neutrophil,
v6-5
900428 105

ATC ...

IAL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
157802 45

ATG ...

MSF ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, v6-5
611 45

CTG ...

LGI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
900242 129

AGG ...

RTS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
514984 207

CTG ...

LLL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
147846 114

ATG ...

MGM ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Neutrophil,
v6-5
646 93

CTG ...

LLL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1081773 48

TTG ...

LKT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
515042 123

CTG ...

LQL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Neutrophil, v6-5
896693 75

ATA ...

ISS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
900124 111

ATC ...

IAL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
513011 60

GTG ...

VFS ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, v6-5
513633 45

ATG ...

MKA ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
514796 180

CTG ...

LFI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
152258 30

ATG ...

MSP ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, v6-5
900657 216

ATT ...

ITL ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
897102 135

AGG ...

RTS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
900985 69

ATA ...

ISS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
899028 57

ATA ...

ICR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
154541 48

CTG ...

LMS ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Liver, v6-5
932 66

CTG ...

LFI ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5