Transcript 1854 | MetamORF

Transcript

ID CARD

MetamORF ID

1854

ENSMUST00000172361

Name

Hnrnpd-211

Strand

Biotype

protein_coding

Start-end positions

99955935-99978938

CDS Start-stop positions

99962545-99978624

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:11991

Aliases

Auf1,
ENSMUSG00000000568, Hnrnpd, Hnrpd,
MGI:101947, NCBI:11991, OFF:Hnrnpd

Chr 5

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1853	63	CTG ...	LHS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Skin_tumor, v6-5
901738	63	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1062572	84	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
828572	36	GTG ...	VAF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, v6-5
67242	201	ATG ...	MAT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
63441	42	GTG ...	VGS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
904760	141	ATT ...	ILF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
834597	45	CTG ...	LKQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, v6-5
834028	90	ATG ...	MGK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, v6-5
522028	63	CTG ...	LLV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, MEF, v6-5
66597	258	CTG ...	LQA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
905349	180	AAG ...	KRG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
523783	120	ATG ...	MVI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
516609	177	GTG ...	VPR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, MEF, v6-5
833755	69	GTG ...	VDI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14
186512	153	ATG ...	MTT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
833831	30	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, v6-5
905231	30	ATC ...	IKG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
65906	258	CTG ...	LRE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, MEF, v6-5
520424	66	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, v6-5
523636	126	ATG ...	MDM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
517367	144	GTG ...	VAA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, v6-5
65804	186	TTG ...	LSR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, v6-5
180719	132	ATG ...	MAT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
905288	36	ACG ...	TRA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
903848	114	GTG ...	VVM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
179163	123	ATG ...	MDI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
67094	261	GTG ...	VLQ ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
574186	282	TTG ...	LQA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, v6-5
185078	33	TTG ...	LES ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
64334	90	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1019881	33	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
901911	36	ACG ...	TPV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
905630	57	ATA ...	IAT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
906255	99	ATA ...	ILN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
67453	192	ATG ...	MDI ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
830706	39	TTG ...	LVA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
521513	30	TTG ...	LCY ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
522871	87	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14
904506	75	ATA ...	IAT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
906161	114	ATT ...	IIA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
832245	93	ATG ...	MED ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
902522	51	AGG ...	RSS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
188062	162	ATG ...	MED ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
172653	39	ATG ...	MGK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, v6-5
904264	48	ATA ...	ILN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
568868	42	TTG ...	LLV ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, v6-5
180555	87	GTG ...	VSS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, MEF, v6-5
522751	36	TTG ...	LAL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1557766	30	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
834259	96	GTG ...	VVM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, Brain, E14, v6-5
904989	72	ATT ...	ITL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
524415	117	GTG ...	VII ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, Brain, E14, Spleen_B_cell, v6-5
524789	144	CTG ...	LVT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
830231	51	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
172570	57	CTG ...	LSK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
521878	108	GTG ...	VQP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, v6-5
2134	51	CTG ...	LGH ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Skin_tumor, v6-5

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