Transcript 789 | MetamORF

Transcript

ID CARD

MetamORF ID

789

ENSMUST00000172165

Name

Sept2-215

Strand

Biotype

protein_coding

Start-end positions

93478993-93509733

CDS Start-stop positions

93491268-93507064

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:18000

Aliases

AW208991,
ENSMUSG00000026276, ENSMUSG00000116048, MGI:97298,
mKIAA0158, NCBI:18000, Nedd-5,
Nedd5, OFF:Septin2, Sept2,
Septin2

Chr 1

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
962259	30	ACG ...	TSV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	BMDC
128823	78	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
929771	36	AGG ...	RLR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
49044	57	TTG ...	LIT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, NSC
10058	42	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Skin_tumor
170868	93	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
303062	99	ATG ...	MKL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
36405	60	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC
895562	48	ACG ...	TSV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	BMDC
204535	45	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
172132	54	TTG ...	LKP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
12102	45	TTG ...	LMS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Skin_tumor
457771	54	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
419999	45	ATC ...	ISE ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12
411085	48	ATG ...	MLD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, C2C12, Glioma, Liver, MEF, MESC
968135	72	ATT ...	IVS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1730932	51	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
53813	93	ATG ...	MQS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
97215	39	ATG ...	MKT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
748961	72	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC
788	90	ATG ...	MPS ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, Skin_tumor
897282	72	AAG ...	KTL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
446948	54	CTG ...	LAM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, NSC
25959	102	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
48279	135	ATG ...	MKL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
971278	54	ATA ...	ITG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
389164	60	CTG ...	LMQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
23583	63	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
50372	81	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
183558	57	ATG ...	MQS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
42925	129	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
458468	33	TTG ...	LNA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
463502	33	CTG ...	LSL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
336704	39	ATG ...	MGC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
943609	54	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
53062	96	CTG ...	LMQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
499241	114	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
449449	39	TTG ...	LCL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
130299	81	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
750518	66	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
963138	36	AAG ...	KTL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
740501	42	ATG ...	MCE ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
34324	33	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
1728057	78	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
546887	75	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
413793	66	ATC ...	IQK ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
52303	75	ATG ...	MKT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
39346	57	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF

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