Transcript 355756

Transcript

ID CARD

MetamORF ID

355756

ENSMUST00000172082

Name

Mtdh-209

Strand

Biotype

retained_intron

Start-end positions

34082694-34103345

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:67154

Aliases

2610103J23Rik,
3D3, 3D3/Lyric, AEG-1,
AV353288, D8Bwg1112e, ENSMUSG00000022255,
Lyric, MGI:1914404, Mtdh,
NCBI:67154, OFF:Mtdh

Chr 15

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
469720	42	CTG ...	LSP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14
947807	93	AAG ...	KNR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1180221	123	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
471940	69	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
362855	279	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
363064	84	CTG ...	LHE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
362715	144	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1181321	57	ATT ...	IVP ...	Ribo-seq	ATT	optimal	1	sORFs_org_Mouse	Intronic sORF	E14
11388	45	TTG ...	LKY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
948465	63	ATC ...	ISE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
11816	57	ATG ...	MDG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
355755	156	TTG ...	LAL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
469905	84	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
469497	30	ATG ...	MKL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
949659	45	AAG ...	KYN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
470414	90	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
789177	126	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
472295	60	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
949321	81	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
472025	234	CTG ...	LET ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
358868	282	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
363036	36	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
471735	141	GTG ...	VDR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell

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