Transcript 9613 | MetamORF

Transcript

ID CARD

MetamORF ID

9613

ENSMUST00000170720

Name

Sptlc2-205

Strand

Biotype

processed_transcript

Start-end positions

87309639-87328613

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:20773

Aliases

ENSMUSG00000021036,
LCB2, LCB2a, MGI:108074,
NCBI:20773, OFF:Sptlc2, Spt2,
Sptlc2

Chr 12

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1300596	228	AAG ...	KRN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
458306	78	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
1300091	180	ATT ...	IES ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
458889	93	TTG ...	LWW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
328806	207	GTG ...	VVG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
330307	285	GTG ...	VPL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, R1E, v6-5
322712	135	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil
9743	87	CTG ...	LQL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, R1E, Skin_tumor
330170	204	GTG ...	VGF ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
330454	288	GTG ...	VVP ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, R1E, v6-5
329614	279	TTG ...	LML ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, R1E, v6-5
9770	90	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E, Skin_tumor
9846	57	GTG ...	VPL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E, Skin_tumor
324998	33	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
328980	231	CTG ...	LKR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, v6-5
661961	63	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
1846838	42	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
9612	48	CTG ...	LDR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E, Skin_tumor
327645	108	GTG ...	VGF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
322695	111	GTG ...	VVG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
9757	60	CTG ...	LVP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, R1E, Skin_tumor
665944	60	TTG ...	LAK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, R1E
1039603	60	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
9902	117	TTG ...	LKE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil, R1E, Skin_tumor
326953	33	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
10006	156	CTG ...	LSA ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, v6-5

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