Transcript 1138336

Transcript

ID CARD

MetamORF ID

1138336

ENSMUST00000170677

Name

Rcbtb2-223

Strand

Biotype

protein_coding

Start-end positions

73143062-73184047

CDS Start-stop positions

73161970-73182599

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:105670

Aliases

2610028E02Rik,
2810420M18Rik, AI448345, AW240694,
Chc1l, ENSMUSG00000022106, MGI:1917200,
NCBI:105670, OFF:Rcbtb2, RC/BTB2,
Rcbtb2

Chr 14

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
680125	33	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
679879	81	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
678582	120	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
681017	258	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1138387	42	CTG ...	LPY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
677157	45	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
28648	33	CTG ...	LTT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
677761	36	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
676628	54	ATG ...	MWE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
347835	36	ATG ...	MKF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
675562	57	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
681307	84	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1310412	57	AGG ...	RRM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
679275	252	TTG ...	LAP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
680445	51	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
10692	108	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
678970	33	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
675957	42	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1141783	33	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	NSC, v6-5
680622	96	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
680898	84	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
681121	60	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
466436	66	CTG ...	LHR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
352335	45	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
679336	261	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1138372	42	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
679948	51	TTG ...	LKL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1179524	267	AAG ...	KCL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
679732	228	CTG ...	LPG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
676595	45	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
675805	30	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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