Transcript 250337

Transcript

ID CARD

MetamORF ID

250337

ENSMUST00000170062

Name

Serinc1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

57523184-57532410

CDS Start-stop positions

57524385-57532395

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:56442

Aliases

1500011D18Rik,
AI315070, AIGP-2, ENSMUSG00000019877,
MGI:1926228, mKIAA1253, NCBI:56442,
OFF:Serinc1, Serinc1, Tde1l,
Tde2, TMS-2, Tms2

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
81717	150	TTG ...	LII ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, NSC
211096	69	GTG ...	VLW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, NSC
1524046	96	CTG ...	LMF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
80843	147	CTG ...	LCR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, Neutrophil, NSC
577152	39	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, MEF, NSC
73347	57	GTG ...	VTR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC
58949	99	CTG ...	LCF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, MEF, Neutrophil, NSC
84051	87	TTG ...	LAM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, MEF, NSC
63511	126	CTG ...	LVG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, MEF, Neutrophil, NSC
1031445	42	TTG ...	LCN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
60208	111	GTG ...	VTR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC
82476	171	TTG ...	LCG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, Neutrophil, NSC
1734724	126	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1510939	93	ATG ...	MFN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
68845	84	TTG ...	LLV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, NSC
66973	150	TTG ...	LLC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, MEF, Neutrophil, NSC
273882	99	ATG ...	MLM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
64484	102	TTG ...	LIY ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC
80451	108	GTG ...	VYR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, MEF, Neutrophil, NSC

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