Transcript 10430 | MetamORF

Transcript

ID CARD

MetamORF ID

10430

ENSMUST00000169114

Name

Erap1-201

Strand

Biotype

protein_coding

Start-end positions

74639568-74693201

CDS Start-stop positions

74646224-74690729

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:80898

Aliases

A-LAP,
ARTS-1, Arts1, ENSMUSG00000021583,
ERAAP, Erap1, MGI:1933403,
NCBI:80898, OFF:Erap1, PILSA,
PILSAP

Chr 13

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
673197	54	TTG ...	LNF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
336235	48	ATG ...	MET ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
1610823	36	TTG ...	LPN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
462803	57	CTG ...	LRV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
1612152	60	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
462650	132	ATG ...	MKA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
993250	48	TTG ...	LYS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
782786	33	CTG ...	LGK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
462640	69	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
781837	63	ATG ...	MAH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
463123	45	TTG ...	LPY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1610974	66	TTG ...	LYS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
782531	30	CTG ...	LEV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
465027	117	GTG ...	VAC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
1041235	60	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
462725	45	CTG ...	LGT ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
942536	75	ATA ...	IVT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
463046	72	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
943444	39	ATA ...	IKT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
464137	153	TTG ...	LIS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
1610205	60	ATG ...	MTF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
944003	48	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1763533	54	ATG ...	MGF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1449580	78	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1610788	90	GTG ...	VQI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
943301	63	AGG ...	RIL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1609331	57	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
943154	57	AAG ...	KLV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
465323	54	CTG ...	LYK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
668494	45	TTG ...	LAE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
942260	36	ATC ...	ICV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
668245	36	TTG ...	LCI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF
943611	84	ATA ...	IHL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1611885	120	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
670594	48	ATG ...	MAI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
782823	45	TTG ...	LKK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil
462244	54	ATG ...	MCS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
1610080	45	ATG ...	MKD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
782029	54	TTG ...	LRP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
672392	69	GTG ...	VFN ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC
847587	39	CTG ...	LCH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
462818	45	ATG ...	MDS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
783295	30	CTG ...	LHL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
10429	30	CTG ...	LER ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, Spleen_B_cell
784103	72	CTG ...	LWR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil
944242	63	ATT ...	IFP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
848441	69	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
978351	63	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

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