Transcript 6933 | MetamORF

Transcript

ID CARD

MetamORF ID

6933

ENSMUST00000168366

Name

Rab11a-205

Strand

Biotype

protein_coding

Start-end positions

64716706-64726710

CDS Start-stop positions

64716943-

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:53869

Aliases

ENSMUSG00000004771,
MGI:1858202, NCBI:53869, OFF:Rab11a,
Rab11a

Chr 9

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
86549	123	ATG ...	MTC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
925103	90	ATT ...	IYV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
924623	117	AAG ...	KQM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	BMDC
87343	180	GTG ...	VFS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF	Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
6932	93	GTG ...	VIY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, Skin_tumor, Spleen_B_cell
87282	108	TTG ...	LWA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	B_cell, Liver, MEF, Spleen_B_cell
84372	159	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
273636	120	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	B_cell, Liver, Spleen_B_cell
924883	129	ATT ...	IVS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF	BMDC
436039	69	GTG ...	VVP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell
923306	138	ATA ...	IYR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	BMDC
924411	102	ATT ...	IYV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
87566	189	GTG ...	VRP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	Brain, Liver, MEF, Neutrophil, R1E, Testis
84206	129	GTG ...	VKM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
922900	111	ATA ...	IRV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
88080	60	ATG ...	MKQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	BMDC, Spleen_B_cell
925011	99	ATA ...	IRV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
87846	162	ATG ...	MGT ...	Predicted Ribo-seq	ATG		14	sORFs_org_Mouse Mackowiak2015	sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
924372	42	AAG ...	KQQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	BMDC

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