Transcript 401249

Transcript

ID CARD

MetamORF ID

401249

ENSMUST00000167927

Name

Mms19-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

41941086-41981114

CDS Start-stop positions

41955589-41981113

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:72199

Aliases

2410001K24Rik,
2610042O15Rik, AI316855, C79368,
C86341, ENSMUSG00000025159, MGI:1919449,
Mms19, Mms19l, NCBI:72199,
OFF:Mms19

Chr 19

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
401295	90	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1363517	66	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
406934	42	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
408459	51	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, v6-5
402578	141	CTG ...	LLM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1158104	45	TTG ...	LHY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1158321	39	GTG ...	VRK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
405963	81	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
407017	60	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
404397	102	CTG ...	LPY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
402018	48	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
42763	36	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1633548	60	TTG ...	LAV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1157538	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
405531	162	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
406960	57	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
402905	54	CTG ...	LQC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
402484	87	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1158963	54	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1363241	117	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
404562	117	GTG ...	VLT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
401242	159	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
407015	147	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1159481	33	GTG ...	VPS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
407932	165	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
402317	72	TTG ...	LED ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
489286	60	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
404300	51	CTG ...	LVT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
406005	114	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
405599	66	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
1157240	36	ATG ...	MLA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
42443	45	CTG ...	LYR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
406500	30	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
405606	75	CTG ...	LLE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, v6-5
1159322	63	CTG ...	LVA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
405304	132	GTG ...	VVQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
402828	36	CTG ...	LQH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
406578	99	CTG ...	LQA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
401896	90	CTG ...	LEA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, v6-5
1159025	48	ATG ...	MHR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
408443	66	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
407238	30	ATG ...	MLT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	Brain, v6-5
1157995	36	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
404594	114	TTG ...	LTR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
401047	99	GTG ...	VMD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1363669	87	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
403829	63	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
401248	48	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, v6-5
1157760	87	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5

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