Transcript 2230 | MetamORF

Transcript

ID CARD

MetamORF ID

2230

ENSMUST00000167006

Name

Pttg1ip-209

Strand

Biotype

retained_intron

Start-end positions

77592337-77597130

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:108705

Aliases

1810010L20Rik,
AI314311, AU018448, C79540,
ENSMUSG00000009291, MGI:2652132, NCBI:108705,
OFF:Pttg1ip, PBF, Pttg1ip

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6441	162	TTG ...	LII ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC, Skin_tumor
924368	42	ATC ...	IRK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
2229	57	GTG ...	VLL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, Skin_tumor
80815	123	CTG ...	LGI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
2867	42	CTG ...	LPP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, Skin_tumor
68086	129	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
5816	45	CTG ...	LLP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, Skin_tumor
915965	204	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
75652	141	CTG ...	LGG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
200296	90	CTG ...	LCS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC
239885	72	CTG ...	LCA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
924290	123	ATG ...	MMK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
64472	162	GTG ...	VLA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
3594	54	CTG ...	LLL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, Skin_tumor
72217	111	GTG ...	VCC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
7623	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, Skin_tumor
79001	36	CTG ...	LFK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC

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