Transcript 174462

Transcript

ID CARD

MetamORF ID

174462

ENSMUST00000166997

Name

Serinc1-203

Strand

Biotype

retained_intron

Start-end positions

57525225-57532477

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:56442

Aliases

1500011D18Rik,
AI315070, AIGP-2, ENSMUSG00000019877,
MGI:1926228, mKIAA1253, NCBI:56442,
OFF:Serinc1, Serinc1, Tde1l,
Tde2, TMS-2, Tms2

Chr 10

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
235287	66	GTG ...	VWQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
60208	111	GTG ...	VTR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
249514	33	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF
80451	108	GTG ...	VYR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
84051	87	TTG ...	LAM ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, v6-5
760549	42	GTG ...	VPM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
58949	99	CTG ...	LCF ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, v6-5
82476	171	TTG ...	LCG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
1023044	51	ATG ...	MCS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1524046	96	CTG ...	LMF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
234936	60	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
197262	90	TTG ...	LFP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
259206	72	GTG ...	VFV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF
418533	42	AAG ...	KKL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
1018645	93	GTG ...	VLF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
577152	39	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
230498	36	CTG ...	LSP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	Brain, C2C12, Liver, MEF, Spleen_B_cell
184956	57	CTG ...	LCI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
80843	147	CTG ...	LCR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
259648	39	TTG ...	LVW ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
174461	108	GTG ...	VRM ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
1510939	93	ATG ...	MFN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
64484	102	TTG ...	LIY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
273882	99	ATG ...	MLM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1031445	42	TTG ...	LCN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
208041	102	ATG ...	MRK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
63511	126	CTG ...	LVG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
66973	150	TTG ...	LLC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
64187	78	TTG ...	LSA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Spleen_B_cell
73347	57	GTG ...	VTR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
68845	84	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
418523	99	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
81717	150	TTG ...	LII ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
211096	69	GTG ...	VLW ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
181444	36	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF
267416	69	TTG ...	LAT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
223032	54	GTG ...	VPR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
58309	60	CTG ...	LVT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Liver, MEF
170065	117	CTG ...	LGS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
265127	51	GTG ...	VFA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF

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