Transcript 9820 | MetamORF

Transcript

ID CARD

MetamORF ID

9820

ENSMUST00000166123

Name

Eif5-202

Strand

Biotype

protein_coding

Start-end positions

111538016-111546752

CDS Start-stop positions

111539616-111544618

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:217869

Aliases

2810011H21Rik,
D12Ertd549e, Eif5, ENSMUSG00000021282,
MGI:95309, NCBI:217869, OFF:Eif5

Chr 12

ORFs

86 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
321710	162	TTG ...	LVV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
322946	93	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
1298777	30	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
324223	75	ATG ...	MAL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell
323031	51	TTG ...	LIH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
939877	117	ATC ...	IKD ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
327892	102	ATG ...	MDL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
459145	69	ATG ...	MSS ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell
1039879	81	TTG ...	LQS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, NSC
1299765	48	ATT ...	IHL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1297005	90	AAG ...	KRK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1300441	102	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
24496	249	CTG ...	LYW ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
328863	132	TTG ...	LSM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
330545	117	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
1300175	102	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
419951	201	ATT ...	IFS ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
1608054	81	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
460988	159	CTG ...	LYL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
322339	108	TTG ...	LSM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
1607155	78	ATG ...	MIG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
331087	144	ATG ...	MTV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E
938625	144	ATA ...	IQA ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
324111	210	GTG ...	VAK ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
458497	36	GTG ...	VRK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
330802	186	TTG ...	LVV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, v6-5
325477	45	TTG ...	LFS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
1133950	78	GTG ...	VRK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
326130	129	ATG ...	MLR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, R1E
26023	72	TTG ...	LGL ...	Ribo-seq	TTG		19	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
665718	111	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
1299506	60	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
327324	132	TTG ...	LML ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, R1E
321639	120	ATG ...	MTV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E
1133028	48	ATG ...	MMT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, R1E, v6-5
938868	156	ATC ...	IPS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
326534	156	GTG ...	VSW ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
1297063	57	CTG ...	LRK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
460275	162	GTG ...	VDA ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell
1299861	147	GTG ...	VRH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1299619	81	ATG ...	MMI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
9819	42	CTG ...	LIK ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
327276	30	TTG ...	LQS ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
420317	45	ACG ...	TSC ...	Ribo-seq	ACG		4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14, MEF
461151	228	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
420220	234	ATA ...	IAY ...	Ribo-seq	ATA	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
939670	102	ATC ...	ILL ...	Ribo-seq	ATC	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
25299	96	TTG ...	LIK ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1300355	96	AGG ...	RKN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
940074	54	ACG ...	TST ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
667458	57	CTG ...	LSV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
328463	63	ATG ...	MDS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
1132360	39	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
459508	159	TTG ...	LGK ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
25282	186	ATG ...	MSE ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
324467	138	GTG ...	VTL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
329786	87	ATG ...	MDS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
26114	54	TTG ...	LTK ...	Ribo-seq	TTG		19	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1299443	30	AAG ...	KKM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
329929	180	GTG ...	VSW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
1607417	84	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1300153	72	AAG ...	KKM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1296521	54	AGG ...	RKN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1297450	36	AAG ...	KKL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
331350	156	TTG ...	LML ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
460517	69	ATG ...	MCG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
323592	132	TTG ...	LVQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
1300079	120	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1847333	36	ATG ...	MQT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	R1E
9844	60	CTG ...	LST ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
461160	165	ATG ...	MAL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
420266	51	ACG ...	TKT ...	Ribo-seq	ACG		4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14, MEF
25370	270	CTG ...	LLR ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1606021	45	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	MEF
1131866	42	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
329079	153	ATG ...	MLR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E
1346019	69	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
24660	267	TTG ...	LRS ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
420057	228	AAG ...	KKL ...	Ribo-seq	AAG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
324517	33	CTG ...	LSV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
1607722	222	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
458946	57	GTG ...	VRH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell
326960	69	CTG ...	LYL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell
458972	171	TTG ...	LVP ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	sORF Upstream	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
9923	30	TTG ...	LWL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
329270	126	ATG ...	MDL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E

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