Transcript 398115

Transcript

ID CARD

MetamORF ID

398115

ENSMUST00000165033

Name

Egr1-202

Strand

Biotype

protein_coding

Start-end positions

34861207-34864956

CDS Start-stop positions

34861489-34863768

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:13653

Aliases

A530045N19Rik,
egr, Egr-1, Egr1,
ENSMUSG00000038418, ETR103, Krox-1,
Krox-24, Krox24, MGI:95295,
NCBI:13653, NGF1-A, NGFI-A,
NGFIA, OFF:Egr1, TIS8,
Zenk, Zfp-6, Zif268

Chr 18

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
398569	66	GTG ...	VTF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
717079	105	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
716977	132	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
395393	51	CTG ...	LRA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
1678489	36	ATG ...	MMI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
394496	63	CTG ...	LVR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, NSC, v6-5
716353	36	CTG ...	LTI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
395486	45	TTG ...	LPC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
712972	78	GTG ...	VGA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
398475	237	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
394296	72	TTG ...	LPV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, v6-5
1678446	33	ATG ...	MIL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
393600	36	GTG ...	VMN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
397407	141	CTG ...	LRT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
1678569	57	CTG ...	LEH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
713116	72	CTG ...	LCR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
716709	141	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
713563	84	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
397243	213	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
715067	102	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
714238	81	GTG ...	VVG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
13687	45	TTG ...	LPG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
394740	72	CTG ...	LAA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
398154	132	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
13617	57	GTG ...	VGG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
716285	30	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
396961	99	TTG ...	LPP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
1005917	141	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
393077	258	ATG ...	MNA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, NSC, v6-5
714510	189	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
712716	84	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Liver, NSC
717925	48	CTG ...	LRP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Liver, NSC
395885	267	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
394082	246	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
397913	138	ATG ...	MRR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, NSC, v6-5
393698	39	GTG ...	VAT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
715477	168	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1006053	285	GTG ...	VWW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
713769	144	GTG ...	VLP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
714799	141	CTG ...	LPE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC
395449	66	CTG ...	LTR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, v6-5
398114	201	ATG ...	MSL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, NSC, v6-5
392802	165	CTG ...	LAP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
394935	120	GTG ...	VTT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
13269	33	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF

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