Transcript 5309 | MetamORF

Transcript

ID CARD

MetamORF ID

5309

ENSMUST00000164283

Name

Glg1-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

111157565-111259200

CDS Start-stop positions

111177686-111259196

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:20340

Aliases

AI593353,
AW537898, CFR, CFR-1,
ENSMUSG00000003316, ESL-1, Glg1,
MG-160, MG160, MGI:104967,
NCBI:20340, OFF:Glg1, Selel

Chr 8

ORFs

113 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
429385	156	GTG ...	VAD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	MEF, Neutrophil, Spleen_B_cell
430678	54	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Spleen_B_cell
756684	93	GTG ...	VIS ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
1325359	159	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
1520119	57	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
431470	90	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
429273	99	GTG ...	VAE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
428677	210	CTG ...	LDY ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1520836	126	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC
428317	57	CTG ...	LLW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Spleen_B_cell
1108591	96	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E, v6-5
430991	42	TTG ...	LLA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
602778	42	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1260785	135	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
431797	114	TTG ...	LKE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
428789	99	CTG ...	LQE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	MEF, Spleen_B_cell, v6-5
920288	192	ATG ...	MVG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
79010	270	ATG ...	MVT ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1029889	75	TTG ...	LKC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
431670	93	CTG ...	LME ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
430335	39	CTG ...	LTL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
430747	195	GTG ...	VVS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
80835	90	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
237875	156	CTG ...	LSC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1071990	120	TTG ...	LIC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Neutrophil, NSC, R1E, v6-5
1521547	66	TTG ...	LPI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
427793	30	CTG ...	LSC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, R1E, Spleen_B_cell
427509	192	CTG ...	LME ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
83012	180	ATG ...	MLT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
604152	48	ATG ...	MSD ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, NSC, R1E, v6-5
5640	117	CTG ...	LIQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
236465	63	TTG ...	LFW ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
606839	51	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1107891	117	TTG ...	LWN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, R1E, v6-5
1072012	63	CTG ...	LIG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
428334	33	TTG ...	LSA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
430285	30	ATG ...	MIG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
1072354	126	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Neutrophil
917799	30	ATC ...	IGK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
242655	87	CTG ...	LMK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, NSC, R1E
78942	42	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	CDS NMD sORF	Neutrophil
1327507	150	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
609292	54	GTG ...	VKE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, NSC, v6-5
428840	30	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
1071909	114	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Neutrophil
608015	57	CTG ...	LVK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC, v6-5
917663	228	AAG ...	KLI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
1519838	84	ATG ...	MYV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
603889	30	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
757182	168	GTG ...	VAP ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, Neutrophil, v6-5
431493	69	TTG ...	LNE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1325484	138	GTG ...	VRN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1521336	36	ATG ...	MWQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, NSC
427659	63	GTG ...	VYK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
236929	75	ATG ...	MKP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
605996	48	TTG ...	LNL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
608628	87	ATG ...	MFG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, R1E
606682	51	ATG ...	MHI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
429504	174	CTG ...	LSP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
247072	39	CTG ...	LDY ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
430151	93	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	NSC, Spleen_B_cell
430194	132	CTG ...	LST ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
431527	237	GTG ...	VSS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
428787	168	GTG ...	VDV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, NSC, Spleen_B_cell
920023	54	ATT ...	ITS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
615329	78	ATG ...	MKP ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
1520901	75	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
431816	48	ATG ...	MPG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
612126	30	GTG ...	VEL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1263102	30	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1582146	45	TTG ...	LNP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
431561	30	GTG ...	VQT ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
431666	126	GTG ...	VLN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
5308	63	GTG ...	VWT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Skin_tumor
246732	60	CTG ...	LIP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
610817	33	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
80733	36	ATG ...	MWQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Spleen_B_cell, v6-5
918336	48	ATT ...	IYT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
1520698	60	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1326662	159	GTG ...	VIC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, NSC
756532	129	GTG ...	VMT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, Neutrophil, v6-5
1072146	54	CTG ...	LMC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil
918751	141	AAG ...	KIQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
1106215	57	TTG ...	LYF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC, R1E, v6-5
5612	90	CTG ...	LHT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Skin_tumor
755923	99	CTG ...	LSV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, Neutrophil, v6-5
428187	63	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
238284	30	GTG ...	VRC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, R1E, v6-5
427681	171	CTG ...	LVK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
428031	207	TTG ...	LVD ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
247268	33	TTG ...	LPR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
428939	183	TTG ...	LEK ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
612235	39	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
427554	33	CTG ...	LVQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
431903	63	GTG ...	VEC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
604005	60	GTG ...	VTS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil, NSC, v6-5
430645	57	TTG ...	LDI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, Spleen_B_cell
1520156	78	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, R1E
607198	36	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
430227	87	GTG ...	VDP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, Spleen_B_cell
253458	78	ATG ...	MTG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
429321	51	ATG ...	MWK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
604216	54	GTG ...	VLK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
239322	54	TTG ...	LNT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
430784	51	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, v6-5
239682	42	GTG ...	VSA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1107017	120	TTG ...	LLW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, R1E, v6-5
430205	45	ATG ...	MCR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC, Spleen_B_cell
430295	87	GTG ...	VQC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Spleen_B_cell, v6-5
5701	63	GTG ...	VED ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1106820	102	CTG ...	LNL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, R1E, v6-5
603878	72	ATG ...	MCG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
430988	204	GTG ...	VDH ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5

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