Transcript 235811

Transcript

ID CARD

MetamORF ID

235811

ENSMUST00000163973

Name

Nob1-205

Strand

Biotype

retained_intron

Start-end positions

107417695-107425051

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:67619

Aliases

1700021I09Rik,
ART-4, ENSMUSG00000003848, MGI:1914869,
NCBI:67619, Nob1, Nob1p,
OFF:Nob1, Psmd8bp1

Chr 8

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
244725	96	TTG ...	LEQ ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
430949	54	GTG ...	VDN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
235810	105	GTG ...	VRE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
428178	30	TTG ...	LTV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
430021	60	CTG ...	LPY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
247256	108	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
235928	69	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
428818	90	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1264947	126	ATC ...	IYT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
610606	30	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
241918	69	GTG ...	VQV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
605999	42	CTG ...	LLC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
605429	69	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1261740	132	AAG ...	KNI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1263842	30	ACG ...	TLW ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
247824	36	GTG ...	VTP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
430649	93	CTG ...	LMG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
610243	51	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
604839	48	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
608135	63	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3

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