Transcript 29723 | MetamORF

Transcript

ID CARD

MetamORF ID

29723

ENSMUST00000163932

Name

Rb1-202

Strand

Biotype

processed_transcript

Start-end positions

73183673-73287707

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:19645

Aliases

ENSMUSG00000022105,
MGI:97874, NCBI:19645, OFF:Rb1,
p110-RB1, pp105, pRb,
Rb, Rb-1, Rb1

Chr 14

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
345862	45	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
349029	147	CTG ...	LSD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
347064	84	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
344207	174	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
347259	45	TTG ...	LYY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1349167	39	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
345519	51	ATG ...	MQD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
350657	33	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
348534	48	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
29722	39	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
345279	108	TTG ...	LIR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
344723	54	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
346107	96	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
347600	87	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1614785	33	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
343681	51	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
785525	30	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
347690	96	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
348967	138	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
343946	30	ATG ...	MIK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
343916	54	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
349962	39	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
346568	114	GTG ...	VCN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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