Transcript 469384

Transcript

ID CARD

MetamORF ID

469384

ENSMUST00000163697

Name

Mtdh-203

Strand

Biotype

retained_intron

Start-end positions

34082725-34124352

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:67154

Aliases

2610103J23Rik,
3D3, 3D3/Lyric, AEG-1,
AV353288, D8Bwg1112e, ENSMUSG00000022255,
Lyric, MGI:1914404, Mtdh,
NCBI:67154, OFF:Mtdh

Chr 15

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
470010	288	GTG ...	VIL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil, Spleen_B_cell
789177	126	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
356476	153	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
469905	84	CTG ...	LAP ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
363064	84	CTG ...	LHE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell
472025	234	CTG ...	LET ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
361255	147	TTG ...	LRR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
469627	48	ATG ...	MLA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
471488	234	CTG ...	LNE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
472295	60	CTG ...	LGT ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
470414	90	CTG ...	LAL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
359319	63	CTG ...	LII ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell, v6-5
362715	144	GTG ...	VAA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
470205	258	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
362855	279	GTG ...	VGT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil, Spleen_B_cell
357174	162	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
472130	168	TTG ...	LSE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
789145	84	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
472465	78	GTG ...	VSR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell
472308	207	GTG ...	VSS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
360379	99	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
360773	90	CTG ...	LSQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
356920	93	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
354979	222	CTG ...	LGD ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
361936	75	GTG ...	VEL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
358868	282	CTG ...	LVG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil, Spleen_B_cell
355492	147	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
355755	156	TTG ...	LAL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
472323	159	CTG ...	LGR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
361005	180	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
683620	51	CTG ...	LFQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
359407	252	CTG ...	LLF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Spleen_B_cell
358073	102	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
469720	42	CTG ...	LSP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
471940	69	CTG ...	LRR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
1353624	48	ATG ...	MKI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
790432	90	ATG ...	MQM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
363036	36	CTG ...	LPG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell

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