Transcript 1085931

Transcript

ID CARD

MetamORF ID

1085931

ENSMUST00000163028

Name

Tmem33-207

Strand

Biotype

retained_intron

Start-end positions

67260896-67269006

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:67878

Aliases

1110006G02Rik,
1600019D15Rik, 2410089A21Rik, 2700052H22Rik,
5430406L04Rik, AA388285, AI314185,
AI426615, db83, ENSMUSG00000037720,
MGI:1915128, NCBI:67878, OFF:Tmem33,
Tmem33

Chr 5

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1019824	114	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1431801	192	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1432076	207	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
830871	90	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1432920	204	CTG ...	LAN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
828440	84	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1019867	66	CTG ...	LKF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1434480	174	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1431286	120	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
61635	33	CTG ...	LPH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, v6-5
830566	108	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
61539	36	ATG ...	MLP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, v6-5
1431291	69	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1433781	132	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1019543	111	TTG ...	LRS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1018820	36	TTG ...	LMP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1019139	99	TTG ...	LDK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1432322	147	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
904622	96	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1433858	180	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
831523	96	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
828523	87	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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