Transcript 35991 | MetamORF

Transcript

ID CARD

MetamORF ID

35991

ENSMUST00000162927

Name

Gtf2h4-212

Strand

Biotype

retained_intron

Start-end positions

35667738-35668760

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:14885

Aliases

AW545633,
BTF2 p52, ENSMUSG00000001524, Gtf2h4,
MGI:1338799, NCBI:14885, OFF:Gtf2h4,
p52

Chr 17

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37058	153	CTG ...	LSQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
1861633	63	CTG ...	LWE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
37893	102	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
707586	30	TTG ...	LCS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
708442	96	GTG ...	VFE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
38081	126	CTG ...	LAH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
706349	66	GTG ...	VVT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
707810	63	GTG ...	VTP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
37841	129	CTG ...	LLA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
36449	144	GTG ...	VDF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
1358715	96	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
701743	72	CTG ...	LMV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
36980	108	CTG ...	LGV ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
1862146	93	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1862257	36	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
35990	168	CTG ...	LYN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis
36909	132	CTG ...	LLL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, R1E, Testis

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