Transcript 1351448

Transcript

ID CARD

MetamORF ID

1351448

ENSMUST00000162795

Name

Rb1cc1-216

Strand

Biotype

protein_coding

Start-end positions

6228002-6249029

CDS Start-stop positions

6230003-

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:12421

Aliases

2900055E04Rik,
5930404L04Rik, Cc1, ENSMUSG00000025907,
FIP200, LaXp180, MGI:1341850,
NCBI:12421, OFF:Rb1cc1, Rb1cc1

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1701788	30	ATG ...	MFG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
1603701	153	GTG ...	VET ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
643216	48	ATG ...	MLI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
377057	30	ATG ...	MHL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	MEF
673515	36	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	MEF
309970	30	TTG ...	LTV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	MEF
1610176	42	GTG ...	VGW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1611766	138	TTG ...	LGI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	MEF
1611096	90	CTG ...	LHK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
1673991	93	CTG ...	LLH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1630271	117	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1351447	33	ATG ...	MYS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
1607427	126	CTG ...	LLY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
304437	45	CTG ...	LIK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF

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