Transcript 30594 | MetamORF

Transcript

ID CARD

MetamORF ID

30594

ENSMUST00000162638

Name

Cdc73-203

Strand

Biotype

processed_transcript

Start-end positions

143606161-143640581

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:214498

Aliases

8430414L16Rik,
C130030P16Rik, C81219, Cdc73,
ENSMUSG00000026361, Hrpt2, MGI:2384876,
NCBI:214498, OFF:Cdc73

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47849	81	TTG ...	LDR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC, Testis, v6-5
539487	72	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
742501	57	TTG ...	LTY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
536299	132	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
33827	48	TTG ...	LDR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Spleen_B_cell, Testis, v6-5
546670	120	TTG ...	LYK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
44720	270	GTG ...	VAV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
391575	36	GTG ...	VGC ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
31237	141	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
925807	114	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
956378	150	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
536326	126	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
939709	57	ACG ...	TDT ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
750843	108	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
30593	36	TTG ...	LAI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Testis, v6-5
743032	48	TTG ...	LRK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
538503	138	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
541605	69	ATG ...	MDH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5

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