Transcript 718774

Transcript

ID CARD

MetamORF ID

718774

ENSMUST00000162416

Name

Psat1-207

Strand

Biotype

protein_coding

Start-end positions

15915009-15947337

CDS Start-stop positions

-15919522

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:107272

Aliases

D8Ertd814e,
ENSMUSG00000024640, EPIP, MGI:2183441,
NCBI:107272, OFF:Psat1, PSA,
Psat, Psat1

Chr 19

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
408016	108	CTG ...	LCT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, v6-5
722106	48	TTG ...	LST ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, NSC
91972	138	ATG ...	MYT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
409396	213	TTG ...	LST ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, v6-5
404106	132	ATG ...	MYT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, v6-5
410430	126	GTG ...	VQT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
404316	78	CTG ...	LTS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
92069	114	CTG ...	LCT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, MEF, v6-5
403622	90	TTG ...	LTS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, v6-5
402693	33	CTG ...	LRK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF, Neutrophil
405560	51	GTG ...	VTC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
410707	84	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
401888	72	CTG ...	LEP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, E14, MEF
92111	198	TTG ...	LEV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, v6-5
490543	36	CTG ...	LCK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
1160407	201	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	MEF, NSC, v6-5
402660	120	GTG ...	VQT ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	3T3, Brain, MEF, Neutrophil, NSC, v6-5
409171	96	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5

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