Transcript 700959

Transcript

ID CARD

MetamORF ID

700959

ENSMUST00000161738

Name

Igf2r-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

12698527-12701279

CDS Start-stop positions

12698788-

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:16004

Aliases

AI661837,
CD222, CI-MPR, ENSMUSG00000023830,
Igf2r, M6P/IGF2R, MGI:96435,
Mpr300, NCBI:16004, OFF:Igf2r

Chr 17

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
708128	78	ATG ...	MVT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
702707	75	TTG ...	LCP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, v6-5
700958	105	GTG ...	VTV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, v6-5
702169	171	CTG ...	LLN ...	Ribo-seq	CTG		9	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, v6-5
1357690	57	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
703672	135	GTG ...	VRD ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, NSC, R1E, v6-5
704610	96	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
708076	84	ATG ...	MWM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, v6-5
705945	75	GTG ...	VTC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, v6-5
956607	39	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
703951	96	CTG ...	LQY ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, v6-5
702742	150	GTG ...	VNL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, v6-5
702970	54	GTG ...	VAE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
704860	36	ATG ...	MPP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
1357526	30	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, NSC
956372	42	ATT ...	IIR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
705112	45	CTG ...	LVS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
1455060	45	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
956893	60	ATT ...	IRR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
704403	87	GTG ...	VDG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, v6-5
955816	156	AAG ...	KPV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
706954	42	GTG ...	VDR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, NSC, v6-5
705446	168	CTG ...	LNG ...	Ribo-seq	CTG		10	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, v6-5
956310	51	AGG ...	RTV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
1454753	57	CTG ...	LFR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	BMDC, Brain
955107	30	AGG ...	RRM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
955296	144	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
706273	54	GTG ...	VPR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	3T3, E14, v6-5
701210	36	ATG ...	MQV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, E14, MEF
1359752	33	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
702649	42	ATG ...	MPS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, E14
955722	60	GTG ...	VLF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	BMDC

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