Transcript 22728 | MetamORF

Transcript

ID CARD

MetamORF ID

22728

ENSMUST00000161609

Name

Rc3h1-202

Strand

Biotype

protein_coding

Start-end positions

160906418-160974978

CDS Start-stop positions

160930114-160967797

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:381305

Aliases

5730557L09Rik,
ENSMUSG00000040423, Gm551, MGI:2685397,
mKIAA2025, N28103, NCBI:381305,
OFF:Rc3h1, Rc3h1

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22727	66	ATG ...	MVA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, Testis
107072	36	CTG ...	LWP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
677902	66	TTG ...	LTF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1635330	42	TTG ...	LHI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
802620	99	GTG ...	VVR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
789014	114	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
677445	54	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1600832	42	TTG ...	LKI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1285375	60	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1631429	30	GTG ...	VAI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
769109	132	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
711959	54	ATG ...	MCR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
708113	36	ATG ...	MYL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1287595	135	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1187659	111	ATG ...	MDG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
27450	63	GTG ...	VAA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, Testis
945048	63	ACG ...	TKQ ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
955061	117	AAG ...	KLH ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
768581	120	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
41898	30	GTG ...	VAT ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, Testis
35175	177	ATG ...	MAP ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, MEF, Testis
957608	75	ATC ...	ISL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1654829	30	GTG ...	VLT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
703359	30	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1648602	45	TTG ...	LTR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1608859	48	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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