Transcript 254646

Transcript

ID CARD

MetamORF ID

254646

ENSMUST00000161569

Name

Exosc7-203

Strand

Biotype

processed_transcript

Start-end positions

123126385-123130928

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:66446

Aliases

2610002K22Rik,
AV212732, ENSMUSG00000025785, Exosc7,
MGI:1913696, mKIAA0116, NCBI:66446,
OFF:Exosc7

Chr 9

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
256246	63	ATG ...	MTL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
265039	45	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
84239	54	TTG ...	LFD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil
259760	123	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
258853	60	ATG ...	MKR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
84780	75	CTG ...	LLE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil
268338	72	GTG ...	VFW ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
254677	66	GTG ...	VMT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
254894	117	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
254645	96	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
616414	96	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
265031	57	TTG ...	LAQ ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
262454	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
260278	30	CTG ...	LTI ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
85395	72	CTG ...	LEC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil
256043	120	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14

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