Transcript 57316 | MetamORF

Transcript

ID CARD

MetamORF ID

57316

ENSMUST00000161123

Name

Pcmt1-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

7629373-7663264

CDS Start-stop positions

7648620-

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:18537

Aliases

C79501,
ENSMUSG00000019795, MGI:97502, NCBI:18537,
OFF:Pcmt1, Pcmt1, PIMT

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
237974	63	CTG ...	LQE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
208735	30	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
56436	66	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, E14
57315	45	GTG ...	VPL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	BMDC, E14, MEF, Testis, v6-5
256769	42	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF
77126	144	TTG ...	LPV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
189720	33	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	NMD sORF	E14, NSC
58532	84	ATG ...	MEE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
276042	42	ATG ...	MQN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
274562	48	TTG ...	LEI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil
271032	36	ATG ...	MES ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	NMD sORF	BMDC, MEF
60681	87	GTG ...	VME ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
86013	54	GTG ...	VIY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	BMDC, E14, Testis, v6-5
1673420	60	TTG ...	LFF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF
258715	72	ATG ...	MKV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	MEF
209641	84	TTG ...	LTS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	MEF
160971	39	GTG ...	VEK ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	NMD sORF	E14, MEF
78368	150	TTG ...	LIL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
1780645	111	ATG ...	MWG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
220725	39	ATG ...	MWE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
77528	111	TTG ...	LEQ ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
1653752	72	TTG ...	LNY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1515752	99	TTG ...	LFF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	MEF, NSC
185914	66	GTG ...	VLK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF
284151	147	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	BMDC
190949	36	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF

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