Transcript 461751

Transcript

ID CARD

MetamORF ID

461751

ENSMUST00000161086

Name

Sdha-205

Strand

Biotype

retained_intron

Start-end positions

74338750-74339756

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:66945

Aliases

1500032O14Rik,
2310034D06Rik, 4921513A11, C81073,
ENSMUSG00000021577, FP, MGI:1914195,
NCBI:66945, OFF:Sdha, SDH2,
Sdha, SDHF

Chr 13

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26590	159	ATG ...	MVC ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell, v6-5
1137190	60	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
847533	138	GTG ...	VKG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Neutrophil, NSC
672250	63	CTG ...	LAG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC
998448	120	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
27726	108	TTG ...	LVD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell
1611228	57	CTG ...	LLW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
26898	114	GTG ...	VHL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell
26675	138	CTG ...	LKM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell, v6-5
338435	87	TTG ...	LGK ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell
463256	186	CTG ...	LGN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
26681	105	GTG ...	VDR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell
781729	54	GTG ...	VWL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
26641	132	ATG ...	MGR ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell, v6-5

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