Transcript 368313

Transcript

ID CARD

MetamORF ID

368313

ENSMUST00000160326

Name

Usp7-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

8689600-8738420

CDS Start-stop positions

8710146-8738285

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:252870

Aliases

2210010O09Rik,
AA409944, AA617399, AU019296,
AW548146, C80752, ENSMUSG00000022710,
Hausp, MGI:2182061, NCBI:252870,
OFF:Usp7, Usp7

Chr 16

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33659	75	GTG ...	VLH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil, v6-5
1146140	168	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1622537	33	ATG ...	MCL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
374200	90	GTG ...	VTD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
1621339	36	ATG ...	MMC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
695048	108	ATG ...	MNF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
369704	30	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14
693002	69	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
371771	60	CTG ...	LEI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
1146030	90	GTG ...	VID ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
693552	108	ATG ...	MMT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
370938	147	CTG ...	LSE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, v6-5
700375	96	ATG ...	MMT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
1146705	57	ATG ...	MQS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
373638	48	ATG ...	MTH ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
697448	45	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF
372564	33	CTG ...	LWT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
694980	33	TTG ...	LCE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
475107	66	TTG ...	LQT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
478020	96	ATG ...	MGT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
693017	42	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
373345	105	GTG ...	VFC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
1356428	96	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1355577	57	GTG ...	VTK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1148490	48	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1621234	54	TTG ...	LDC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1147270	75	CTG ...	LQI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1147380	102	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1356046	102	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
368312	72	TTG ...	LFF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, v6-5
1356247	75	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1146829	135	TTG ...	LSF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1148128	57	ATG ...	MGV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1354865	93	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
371651	129	CTG ...	LKI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF, v6-5
371237	57	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
1146075	48	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
370745	51	TTG ...	LLQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, v6-5
372265	30	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
696157	69	GTG ...	VGL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
34017	99	GTG ...	VKF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Neutrophil, v6-5
1148027	36	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
693614	108	CTG ...	LLK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
34835	84	TTG ...	LPP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Neutrophil, v6-5
694173	60	TTG ...	LQR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
693650	84	ATG ...	MED ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, NSC, v6-5
693781	60	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
692917	141	ATG ...	MTQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, E14, Glioma, Liver, MEF, MESC, v6-5
1356139	78	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
699391	177	ATG ...	MTL ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
474617	78	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1146297	39	GTG ...	VEI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
695012	105	ATG ...	MTW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
33922	66	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Neutrophil, v6-5
1147432	51	CTG ...	LHK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1147370	45	ATG ...	MMI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
695020	111	TTG ...	LMN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1147351	90	ATG ...	MTN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
693652	33	CTG ...	LFD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
697898	120	GTG ...	VSC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, v6-5
694827	30	ATG ...	MNY ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
372907	114	GTG ...	VRN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, Neutrophil, v6-5
375900	87	GTG ...	VMP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, v6-5
691844	51	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
368651	132	GTG ...	VLK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, E14, MEF, v6-5
696701	33	ATG ...	MLI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	E14, Glioma, Liver, MEF, MESC, v6-5
369653	105	CTG ...	LPW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, Neutrophil, v6-5
372559	129	CTG ...	LSD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, v6-5

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