Transcript 12180 | MetamORF

Transcript

ID CARD

MetamORF ID

12180

ENSMUST00000159514

Name

Naa50-203

Strand

Biotype

protein_coding

Start-end positions

44139830-44162474

CDS Start-stop positions

44144893-44159640

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:72117

Aliases

2600005K24Rik,
2810441M03Rik, AW112078, ENSMUSG00000022698,
Mak3, Mak3p, MGI:1919367,
Naa50, Nat13, Nat5,
NCBI:72117, OFF:Naa50, San

Chr 16

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12403	78	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
372950	33	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
35233	33	ATG ...	MSI ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
34178	135	TTG ...	LAS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Spleen_B_cell
477077	249	CTG ...	LAA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell, v6-5
377510	39	ATG ...	MPC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, Spleen_B_cell
34085	42	CTG ...	LAW ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, Spleen_B_cell
12635	93	CTG ...	LQG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Skin_tumor, Spleen_B_cell
12612	129	GTG ...	VRR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Skin_tumor, Spleen_B_cell
1189378	144	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
474661	207	GTG ...	VWR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
35120	102	TTG ...	LSG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Spleen_B_cell
12318	93	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Skin_tumor, Spleen_B_cell
1860293	57	ATG ...	MEC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
1187216	57	AGG ...	RAR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
12457	48	TTG ...	LAL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
474080	141	CTG ...	LRA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell, v6-5
1187612	222	ATG ...	MCF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
12455	90	CTG ...	LQG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Skin_tumor, Spleen_B_cell
12606	120	ATG ...	MAL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
1185638	51	AGG ...	RSS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
34445	36	ATG ...	MPC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
371695	177	GTG ...	VEE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
33688	108	GTG ...	VGL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, Spleen_B_cell
33975	57	GTG ...	VQC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
12179	93	ATG ...	MSR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
12581	96	GTG ...	VLQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, Skin_tumor, Spleen_B_cell
12360	42	TTG ...	LRL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell
34548	93	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Spleen_B_cell
375919	225	CTG ...	LAG ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
951236	228	ACG ...	TRM ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
35687	39	TTG ...	LVM ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, R1E, Testis, v6-5
369116	42	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
12276	66	TTG ...	LTF ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Skin_tumor, Spleen_B_cell, v6-5
475807	222	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
421893	213	GTG ...	VHV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
1186302	33	ATT ...	IHR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
951317	252	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1185601	72	ATT ...	ISP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14

Export data