Transcript 193988

Transcript

ID CARD

MetamORF ID

193988

ENSMUST00000159397

Name

Wnk1-206

Strand

Biotype

retained_intron

Start-end positions

119953650-120038607

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:232341

Aliases

6430573H23Rik,
EG406236, ENSMUSG00000045962, Hsn2,
MGI:2442092, mKIAA0344, NCBI:232341,
OFF:Wnk1, Prkwnk1, Wnk1

Chr 6

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
199897	141	GTG ...	VNQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
68274	276	GTG ...	VTA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
194748	111	ATG ...	MPP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
195925	159	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
193987	222	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
199147	297	ATG ...	MAQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
67923	135	GTG ...	VAP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
69793	297	GTG ...	VST ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
201485	96	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
70897	63	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
69747	216	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
198007	39	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
202233	234	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
205615	207	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
68586	60	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
203450	150	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
525437	36	GTG ...	VLH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
205773	54	CTG ...	LNI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
196691	210	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
205935	60	GTG ...	VYL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
201943	39	CTG ...	LKG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
200543	54	CTG ...	LQW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
196406	249	GTG ...	VMK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
202859	216	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
202537	39	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
200189	117	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
198211	222	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
67591	165	ATG ...	MDA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E

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