Transcript 30751 | MetamORF

Transcript

ID CARD

MetamORF ID

30751

ENSMUST00000159293

Name

Marc2-202

Strand

Biotype

processed_transcript

Start-end positions

184819236-184845808

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:67247

Aliases

2810484M10Rik,
ENSMUSG00000073481, mARC1, Marc2,
MGI:1914497, Mosc2, Mtarc2,
NCBI:67247, OFF:Mtarc2

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
876348	276	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
113570	237	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
321003	168	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
890664	261	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
846234	255	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
464950	30	CTG ...	LKV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
69338	129	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
856875	207	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
11954	69	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
9402	60	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
874893	198	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
30750	117	GTG ...	VKM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
849149	270	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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