Transcript 55882 | MetamORF

Transcript

ID CARD

MetamORF ID

55882

ENSMUST00000156987

Name

Orc3-211

Strand

Biotype

processed_transcript

Start-end positions

34577643-34614911

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:50793

Aliases

ENSMUSG00000040044,
MGI:1354944, NCBI:50793, OFF:Orc3,
Orc3, Orc3l

Chr 4

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
162889	294	GTG ...	VIL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E, v6-5
1654077	72	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
510911	75	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
59490	60	TTG ...	LTL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC, Spleen_B_cell, Testis
1058401	159	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
55881	33	TTG ...	LKH ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC, Spleen_B_cell, Testis
147655	96	CTG ...	LCC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Spleen_B_cell
164103	156	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
509189	39	CTG ...	LCR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
152220	75	CTG ...	LYC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Spleen_B_cell
510937	60	GTG ...	VFK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
56793	54	CTG ...	LRT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC, Spleen_B_cell, Testis
556688	84	ATG ...	MIA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
509070	42	GTG ...	VFC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
162795	246	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E, v6-5
1653384	90	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1059820	180	GTG ...	VNV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
822891	36	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
511300	102	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
513123	117	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
512923	72	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
161840	243	GTG ...	VSI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
512194	42	CTG ...	LNS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
512221	30	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1083386	234	CTG ...	LQA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
511657	159	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1654866	51	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
512665	66	TTG ...	LTF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
509750	180	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1885910	114	CTG ...	LTN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
511119	57	GTG ...	VCR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
1230789	51	AAG ...	KIW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
58015	69	ATG ...	MRN ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC, Spleen_B_cell, Testis
511359	42	CTG ...	LLC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
511096	93	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
1059600	63	TTG ...	LLW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1654371	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
509600	123	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
1885129	96	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
163007	261	CTG ...	LAK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E, v6-5

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